Variant report

Variant	rs28479407
Chromosome Location	chr14:25033756-25033757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10130107	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11624387	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11627296	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11844124	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11851426	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12147169	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12147746	0.84[EUR][1000 genomes]
rs17105315	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2332400	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2332402	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34530338	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3759639	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56871173	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74036792	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74039126	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74039131	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs74039134	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74039181	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25033200-25043400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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