Variant report

Variant	rs2056650
Chromosome Location	chr2:54137136-54137137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:72115529..72117582-chr2:54136629..54139608,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10204047	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10204432	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10490472	0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10490473	0.95[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13387421	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13404007	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13426962	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17039534	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17045139	0.84[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17045239	0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17045241	0.95[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]
rs17045262	0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17045286	0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17045296	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2287339	0.88[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs2287342	0.90[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2287346	1.00[ASW][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2287347	0.84[CHB][hapmap];0.80[CHD][hapmap]
rs2302876	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2302880	1.00[ASW][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28834518	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3213768	0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3213774	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3755113	1.00[ASW][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3755114	0.90[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3755115	0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs3755116	0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3755119	0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3770390	0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3770391	0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3770396	0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3815650	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3821079	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59951261	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60972886	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6545368	0.84[CHB][hapmap];0.82[CHD][hapmap]
rs6761242	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72799242	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72799275	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72799293	0.81[EUR][1000 genomes]
rs72901302	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72902916	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72902923	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72902926	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72902929	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72902937	0.81[AMR][1000 genomes]
rs7601553	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7605552	0.94[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54087000-54168000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr2:54087200-54176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:54087400-54137600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:54087600-54187600	Weak transcription	Stomach Mucosa	stomach
5	chr2:54088400-54137200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:54088600-54138000	Strong transcription	Primary B cells from peripheral blood	blood
7	chr2:54090200-54137800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:54090200-54138200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:54090400-54137600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:54090800-54137400	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr2:54091000-54137800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr2:54091000-54138000	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr2:54091200-54138000	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr2:54091400-54137600	Strong transcription	Liver	Liver
15	chr2:54094000-54137800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr2:54099200-54137400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:54100400-54137800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr2:54100400-54137800	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr2:54100400-54140200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr2:54100600-54137400	Strong transcription	Placenta	Placenta
21	chr2:54100600-54137800	Strong transcription	Primary B cells from cord blood	blood
22	chr2:54100600-54141200	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr2:54100800-54138000	Strong transcription	Fetal Muscle Trunk	muscle
24	chr2:54105800-54137200	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr2:54106000-54138000	Strong transcription	Dnd41	blood
26	chr2:54106200-54138400	Strong transcription	Adipose Nuclei	Adipose
27	chr2:54106600-54137800	Strong transcription	Duodenum Mucosa	Duodenum
28	chr2:54108200-54137400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr2:54108200-54177400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr2:54108400-54137400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:54108600-54137800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr2:54108800-54137400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:54109400-54137200	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr2:54109400-54137400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr2:54109400-54137400	Strong transcription	Fetal Lung	lung
36	chr2:54109400-54137600	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr2:54109400-54137800	Strong transcription	NH-A	brain
38	chr2:54109800-54179800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr2:54111200-54137600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr2:54113200-54144600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr2:54121800-54137400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr2:54122200-54172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr2:54124400-54159200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr2:54124600-54137400	Strong transcription	Fetal Intestine Large	intestine
45	chr2:54124800-54137600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr2:54124800-54137600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr2:54124800-54137600	Strong transcription	HSMM	muscle
48	chr2:54124800-54140800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr2:54124800-54141000	Strong transcription	Osteobl	bone
50	chr2:54125000-54137600	Strong transcription	Muscle Satellite Cultured Cells	--

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