Variant report

Variant	rs2058418
Chromosome Location	chr7:117856291-117856292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117822159..117825807-chr7:117854196..117858736,4	K562	blood:
2	chr7:117851686..117854331-chr7:117855579..117858134,2	K562	blood:
3	chr7:117851576..117854331-chr7:117855447..117858134,2	K562	blood:

Variant related genes	Relation type
ENSG00000128534	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10085904	0.84[CEU][hapmap];0.80[MKK][hapmap];0.81[EUR][1000 genomes]
rs1015782	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10247768	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs10487392	0.82[EUR][1000 genomes]
rs10953864	0.80[EUR][1000 genomes]
rs11487110	0.96[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11542074	0.84[EUR][1000 genomes]
rs11766194	0.81[EUR][1000 genomes]
rs11769403	0.81[EUR][1000 genomes]
rs11974039	0.88[CEU][hapmap]
rs11983651	0.85[CEU][hapmap]
rs12154684	0.81[EUR][1000 genomes]
rs12537795	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs12670769	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12706182	0.83[EUR][1000 genomes]
rs13221114	0.81[EUR][1000 genomes]
rs13221120	0.81[EUR][1000 genomes]
rs1544584	0.84[EUR][1000 genomes]
rs17140984	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs17141053	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs1859132	0.81[EUR][1000 genomes]
rs1859133	0.81[EUR][1000 genomes]
rs2041527	0.88[ASW][hapmap];0.92[CEU][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.89[LWK][hapmap];0.93[TSI][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2215628	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs2286863	0.84[EUR][1000 genomes]
rs2286865	0.88[CEU][hapmap]
rs33924981	0.84[EUR][1000 genomes]
rs34019303	0.84[EUR][1000 genomes]
rs35218902	0.86[EUR][1000 genomes]
rs35485182	0.81[EUR][1000 genomes]
rs35708505	0.85[EUR][1000 genomes]
rs41944	0.87[EUR][1000 genomes]
rs41965	0.85[EUR][1000 genomes]
rs41981	0.85[EUR][1000 genomes]
rs41992	0.85[EUR][1000 genomes]
rs42488	0.85[EUR][1000 genomes]
rs4260840	0.80[EUR][1000 genomes]
rs45604739	0.84[EUR][1000 genomes]
rs4599745	0.85[EUR][1000 genomes]
rs4730837	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs4730853	0.84[EUR][1000 genomes]
rs5000271	0.80[EUR][1000 genomes]
rs5002232	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61328879	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62466471	0.82[EUR][1000 genomes]
rs62466515	0.84[EUR][1000 genomes]
rs62468297	0.81[EUR][1000 genomes]
rs6466648	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6942513	0.96[CEU][hapmap];0.86[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6956486	0.80[EUR][1000 genomes]
rs6964911	0.87[CEU][hapmap]
rs769435	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7779933	0.82[AFR][1000 genomes]
rs7786233	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs7799229	0.84[CEU][hapmap]
rs917761	0.81[EUR][1000 genomes]
rs9641593	0.84[EUR][1000 genomes]
rs9656259	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9656260	0.80[EUR][1000 genomes]
rs996726	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2058418	LSM8	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117855000-117857400	Weak transcription	Ovary	ovary
2	chr7:117855200-117857600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:117855200-117859400	Weak transcription	Fetal Kidney	kidney
4	chr7:117856000-117856600	Weak transcription	Dnd41	blood

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