Variant report

Variant	rs61328879
Chromosome Location	chr7:117862220-117862221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117856350..117860138-chr7:117860834..117863487,3	K562	blood:
2	chr7:117861485..117863547-chr7:117866235..117868963,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1015782	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10247768	0.82[EUR][1000 genomes]
rs10487392	0.84[EUR][1000 genomes]
rs11487110	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11542074	0.82[EUR][1000 genomes]
rs11766194	0.83[EUR][1000 genomes]
rs11769403	0.83[EUR][1000 genomes]
rs12670769	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706182	0.85[EUR][1000 genomes]
rs13221114	0.83[EUR][1000 genomes]
rs13221120	0.83[EUR][1000 genomes]
rs1544584	0.82[EUR][1000 genomes]
rs1548812	0.80[EUR][1000 genomes]
rs17140984	0.82[EUR][1000 genomes]
rs1859132	0.83[EUR][1000 genomes]
rs1859133	0.83[EUR][1000 genomes]
rs2041527	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2058418	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2215628	0.82[EUR][1000 genomes]
rs2286863	0.82[EUR][1000 genomes]
rs33924981	0.82[EUR][1000 genomes]
rs34019303	0.82[EUR][1000 genomes]
rs35218902	0.84[EUR][1000 genomes]
rs35708505	0.87[EUR][1000 genomes]
rs41903	0.81[EUR][1000 genomes]
rs41904	0.81[EUR][1000 genomes]
rs41944	0.89[EUR][1000 genomes]
rs41965	0.87[EUR][1000 genomes]
rs41981	0.87[EUR][1000 genomes]
rs41992	0.87[EUR][1000 genomes]
rs42488	0.87[EUR][1000 genomes]
rs4260840	0.82[EUR][1000 genomes]
rs45604739	0.82[EUR][1000 genomes]
rs4599745	0.87[EUR][1000 genomes]
rs4730837	0.82[EUR][1000 genomes]
rs4730853	0.86[EUR][1000 genomes]
rs4730862	0.80[EUR][1000 genomes]
rs5000271	0.82[EUR][1000 genomes]
rs5002232	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62466471	0.80[EUR][1000 genomes]
rs62466515	0.82[EUR][1000 genomes]
rs6466648	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6942513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs769435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779933	0.81[AFR][1000 genomes]
rs7786233	0.80[EUR][1000 genomes]
rs9641593	0.82[EUR][1000 genomes]
rs9656259	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs996726	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61328879	LSM8	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117860800-117862800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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