Variant report

Variant	rs2058424
Chromosome Location	chr4:16288349-16288350
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1018126	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11721872	0.88[ASN][1000 genomes]
rs11731242	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11731731	0.88[ASN][1000 genomes]
rs11733994	0.88[ASN][1000 genomes]
rs11736183	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1501130	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16893213	0.96[CHD][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs16893270	0.92[ASN][1000 genomes]
rs16893310	0.86[JPT][hapmap]
rs17308524	0.80[ASN][1000 genomes]
rs17487632	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1801072	0.82[ASN][1000 genomes]
rs1909915	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1987773	0.80[ASN][1000 genomes]
rs2041538	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2191955	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2312942	0.82[ASN][1000 genomes]
rs2312945	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28399788	0.80[ASN][1000 genomes]
rs28608599	0.83[ASN][1000 genomes]
rs41531449	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4577575	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55823457	0.80[ASN][1000 genomes]
rs56127222	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57499215	0.92[ASN][1000 genomes]
rs59179944	0.80[ASN][1000 genomes]
rs6449226	0.80[ASN][1000 genomes]
rs6449228	0.80[ASN][1000 genomes]
rs6449229	0.80[ASN][1000 genomes]
rs67487480	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67965240	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6817116	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6821068	0.80[ASN][1000 genomes]
rs6826508	0.80[ASN][1000 genomes]
rs6826788	0.80[ASN][1000 genomes]
rs6834803	0.80[ASN][1000 genomes]
rs6837983	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6843493	0.82[ASN][1000 genomes]
rs73235992	0.80[ASN][1000 genomes]
rs929557	0.92[ASN][1000 genomes]
rs929558	0.92[ASN][1000 genomes]
rs975668	0.80[ASN][1000 genomes]
rs975669	0.80[ASN][1000 genomes]
rs975777	0.80[ASN][1000 genomes]
rs975778	0.80[ASN][1000 genomes]
rs990782	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537047	chr4:16182060-16375787	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv537048	chr4:16226406-16375787	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2058424	TACO1	trans	cerebellum	SCAN
rs2058424	ADAMTS19	trans	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16286400-16291800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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