Variant report

Variant	rs1501130
Chromosome Location	chr4:16387470-16387471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:16387221..16389892-chr4:16394899..16397221,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1018126	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10489062	0.83[ASN][1000 genomes]
rs11731242	0.88[EUR][1000 genomes]
rs11731585	0.84[ASN][1000 genomes]
rs11736183	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1558451	0.85[ASN][1000 genomes]
rs16893226	0.84[ASN][1000 genomes]
rs16893280	0.83[ASN][1000 genomes]
rs16893307	0.85[ASN][1000 genomes]
rs16893309	0.85[ASN][1000 genomes]
rs16893310	0.85[JPT][hapmap]
rs17487632	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1909915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1987772	0.85[ASN][1000 genomes]
rs2041538	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2041539	0.83[ASN][1000 genomes]
rs2058424	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2109886	0.85[ASN][1000 genomes]
rs2191955	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2191958	0.85[ASN][1000 genomes]
rs2312943	0.85[ASN][1000 genomes]
rs2312945	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34017372	0.85[ASN][1000 genomes]
rs4066790	0.83[ASN][1000 genomes]
rs41531449	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4577575	0.94[EUR][1000 genomes]
rs4586928	0.83[ASN][1000 genomes]
rs56127222	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57338172	0.85[ASN][1000 genomes]
rs60333108	0.85[ASN][1000 genomes]
rs61165707	0.85[ASN][1000 genomes]
rs6449227	0.85[ASN][1000 genomes]
rs6449232	0.85[ASN][1000 genomes]
rs6449233	0.85[ASN][1000 genomes]
rs6449234	0.85[ASN][1000 genomes]
rs67135076	0.85[ASN][1000 genomes]
rs67412386	0.85[ASN][1000 genomes]
rs67487480	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67965240	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6815201	0.85[ASN][1000 genomes]
rs6817116	1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6822072	0.85[ASN][1000 genomes]
rs6837983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6844050	0.85[ASN][1000 genomes]
rs7695368	0.85[ASN][1000 genomes]
rs990782	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1006449	chr4:16338191-16412544	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428755	chr4:16366311-16528135	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv518102	chr4:16386449-16410294	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16385600-16388000	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links