Variant report

Variant	rs4066790
Chromosome Location	chr4:16325339-16325340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:16319018..16321185-chr4:16323184..16326091,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10489062	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11721872	0.83[EUR][1000 genomes]
rs11731585	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11731731	0.82[EUR][1000 genomes]
rs11733994	0.83[EUR][1000 genomes]
rs11736183	0.86[ASN][1000 genomes]
rs1501130	0.83[ASN][1000 genomes]
rs1558451	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16893226	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16893270	0.83[EUR][1000 genomes]
rs16893280	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16893307	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16893309	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16893310	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17308524	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1987772	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1987773	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2041538	0.86[ASN][1000 genomes]
rs2041539	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2109886	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2191955	0.85[ASN][1000 genomes]
rs2312943	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2312945	0.88[ASN][1000 genomes]
rs28399788	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34017372	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41531449	0.86[ASN][1000 genomes]
rs4484297	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4586928	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55823457	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56127222	0.84[ASN][1000 genomes]
rs57338172	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57499215	0.83[EUR][1000 genomes]
rs59179944	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60333108	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60706134	0.82[EUR][1000 genomes]
rs61165707	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6449226	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6449227	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6449228	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6449229	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6449230	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6449232	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6449233	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6449234	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6449236	0.82[EUR][1000 genomes]
rs67135076	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67412386	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67487480	0.86[ASN][1000 genomes]
rs67798922	0.81[EUR][1000 genomes]
rs67965240	0.86[ASN][1000 genomes]
rs6815201	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6821068	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6822072	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6826508	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6826788	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6834803	0.83[EUR][1000 genomes]
rs6844050	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73234672	0.86[ASN][1000 genomes]
rs73234682	0.83[ASN][1000 genomes]
rs73234684	0.83[ASN][1000 genomes]
rs73235992	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7680027	0.81[EUR][1000 genomes]
rs7695368	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs929557	0.83[EUR][1000 genomes]
rs929558	0.83[EUR][1000 genomes]
rs975668	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs975669	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs975777	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs975778	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs990782	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537047	chr4:16182060-16375787	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv537048	chr4:16226406-16375787	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3520762	chr4:16324941-16325452	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3520764	chr4:16324941-16325452	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv289848	chr4:16325251-16325370	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16324400-16325800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:16325000-16331200	Weak transcription	H9 Cell Line	embryonic stem cell

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