Variant report

Variant	rs73234682
Chromosome Location	chr4:16263405-16263406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:16142195..16144224-chr4:16262323..16264122,2	K562	blood:
2	chr4:16234324..16237129-chr4:16262058..16264893,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10489059	0.83[EUR][1000 genomes]
rs10489060	0.83[EUR][1000 genomes]
rs10489062	0.83[ASN][1000 genomes]
rs10489066	0.87[EUR][1000 genomes]
rs11731585	0.89[ASN][1000 genomes]
rs1558451	0.85[ASN][1000 genomes]
rs16893226	0.89[ASN][1000 genomes]
rs16893241	0.87[EUR][1000 genomes]
rs16893280	0.83[ASN][1000 genomes]
rs16893297	0.87[EUR][1000 genomes]
rs16893307	0.85[ASN][1000 genomes]
rs16893309	0.85[ASN][1000 genomes]
rs16893385	0.83[EUR][1000 genomes]
rs16893387	0.83[EUR][1000 genomes]
rs1801072	0.93[EUR][1000 genomes]
rs1987772	0.85[ASN][1000 genomes]
rs2041539	0.83[ASN][1000 genomes]
rs2109886	0.85[ASN][1000 genomes]
rs2215639	0.83[EUR][1000 genomes]
rs2312943	0.85[ASN][1000 genomes]
rs34017372	0.85[ASN][1000 genomes]
rs4066790	0.83[ASN][1000 genomes]
rs4574401	0.86[EUR][1000 genomes]
rs4586928	0.83[ASN][1000 genomes]
rs57338172	0.85[ASN][1000 genomes]
rs60333108	0.85[ASN][1000 genomes]
rs61165707	0.85[ASN][1000 genomes]
rs6449227	0.85[ASN][1000 genomes]
rs6449232	0.85[ASN][1000 genomes]
rs6449233	0.85[ASN][1000 genomes]
rs6449234	0.85[ASN][1000 genomes]
rs67135076	0.85[ASN][1000 genomes]
rs67412386	0.85[ASN][1000 genomes]
rs6815201	0.85[ASN][1000 genomes]
rs6822072	0.85[ASN][1000 genomes]
rs6844050	0.85[ASN][1000 genomes]
rs6851339	0.90[EUR][1000 genomes]
rs6851785	0.90[EUR][1000 genomes]
rs73234672	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73234684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73234692	0.90[EUR][1000 genomes]
rs73234694	0.89[EUR][1000 genomes]
rs73234696	0.87[EUR][1000 genomes]
rs73234701	0.87[EUR][1000 genomes]
rs73235977	0.87[EUR][1000 genomes]
rs73235978	0.84[EUR][1000 genomes]
rs73235995	0.81[EUR][1000 genomes]
rs73238006	0.82[EUR][1000 genomes]
rs73239725	0.82[EUR][1000 genomes]
rs73239734	0.83[EUR][1000 genomes]
rs73239740	0.83[EUR][1000 genomes]
rs73239743	0.83[EUR][1000 genomes]
rs73239747	0.81[EUR][1000 genomes]
rs73239749	0.81[EUR][1000 genomes]
rs73239751	0.83[EUR][1000 genomes]
rs73239758	0.83[EUR][1000 genomes]
rs73239760	0.83[EUR][1000 genomes]
rs73239761	0.82[EUR][1000 genomes]
rs73239765	0.83[EUR][1000 genomes]
rs73239766	0.83[EUR][1000 genomes]
rs73239768	0.83[EUR][1000 genomes]
rs73239769	0.83[EUR][1000 genomes]
rs73239771	0.83[EUR][1000 genomes]
rs73239772	0.83[EUR][1000 genomes]
rs73239773	0.83[EUR][1000 genomes]
rs73239774	0.83[EUR][1000 genomes]
rs7685190	0.84[EUR][1000 genomes]
rs7695368	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537047	chr4:16182060-16375787	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv537048	chr4:16226406-16375787	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16234200-16264800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:16235400-16272800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:16238200-16266000	Weak transcription	Fetal Brain Male	brain
4	chr4:16242200-16267800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:16244000-16265000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:16245600-16266000	Weak transcription	Brain Angular Gyrus	brain
7	chr4:16251800-16264400	Weak transcription	Fetal Brain Female	brain
8	chr4:16252800-16266600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:16252800-16267400	Weak transcription	Pancreas	Pancrea
10	chr4:16254800-16268800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr4:16256200-16270800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:16256400-16266400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:16256400-16270600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr4:16258200-16278600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:16258400-16267400	Weak transcription	Gastric	stomach
16	chr4:16258400-16268000	Weak transcription	Esophagus	oesophagus
17	chr4:16258400-16268000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr4:16258400-16270600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr4:16258400-16271200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:16258600-16264400	Weak transcription	Left Ventricle	heart
21	chr4:16258600-16267400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr4:16258600-16268800	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:16258600-16270600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr4:16258600-16272000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr4:16258800-16267400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr4:16258800-16267400	Weak transcription	Fetal Intestine Small	intestine
27	chr4:16258800-16268000	Weak transcription	Fetal Stomach	stomach
28	chr4:16259000-16271000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr4:16259200-16263800	Weak transcription	Primary T cells from cord blood	blood
30	chr4:16259200-16264600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:16259200-16266200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:16259200-16271000	Weak transcription	Adipose Nuclei	Adipose
33	chr4:16259400-16270600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr4:16259400-16270800	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:16259400-16272200	Weak transcription	Fetal Intestine Large	intestine
36	chr4:16261600-16272200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr4:16262000-16265800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr4:16262600-16264800	Enhancers	Primary B cells from peripheral blood	blood
39	chr4:16263400-16263600	Flanking Active TSS	Primary B cells from cord blood	blood
40	chr4:16263400-16263600	Enhancers	Fetal Thymus	thymus
41	chr4:16263400-16264800	Enhancers	Dnd41	blood

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