Variant report

Variant	rs4484297
Chromosome Location	chr4:16332382-16332383
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:16331798..16335655-chr4:16340723..16344531,3	K562	blood:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10489059	0.91[ASN][1000 genomes]
rs10489060	0.91[ASN][1000 genomes]
rs10489062	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10489066	0.91[ASN][1000 genomes]
rs11721872	0.96[EUR][1000 genomes]
rs11731585	0.97[EUR][1000 genomes]
rs11731731	0.95[EUR][1000 genomes]
rs11733994	0.96[EUR][1000 genomes]
rs1501129	0.83[ASN][1000 genomes]
rs1558451	0.99[EUR][1000 genomes]
rs16893213	0.81[EUR][1000 genomes]
rs16893226	0.98[EUR][1000 genomes]
rs16893241	0.86[ASN][1000 genomes]
rs16893270	0.97[EUR][1000 genomes]
rs16893280	0.95[EUR][1000 genomes]
rs16893297	0.91[ASN][1000 genomes]
rs16893307	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16893309	0.99[EUR][1000 genomes]
rs16893310	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16893385	0.91[ASN][1000 genomes]
rs16893387	0.91[ASN][1000 genomes]
rs17308524	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1987772	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1987773	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2041539	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2109886	0.98[EUR][1000 genomes]
rs2215639	0.91[ASN][1000 genomes]
rs2312942	0.81[EUR][1000 genomes]
rs2312943	0.99[EUR][1000 genomes]
rs2312945	0.80[AFR][1000 genomes]
rs28399788	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34017372	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4066790	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4574401	0.91[ASN][1000 genomes]
rs4586928	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55823457	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57338172	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57499215	0.97[EUR][1000 genomes]
rs59179944	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60333108	0.99[EUR][1000 genomes]
rs60706134	0.95[EUR][1000 genomes]
rs61165707	0.99[EUR][1000 genomes]
rs6449226	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6449227	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6449228	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6449229	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6449230	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6449232	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6449233	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6449234	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6449236	0.95[EUR][1000 genomes]
rs67135076	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67412386	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67798922	0.93[EUR][1000 genomes]
rs6815201	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6821068	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6822072	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6826508	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6826788	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6834803	0.97[EUR][1000 genomes]
rs6844050	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6851339	0.86[ASN][1000 genomes]
rs6851785	0.86[ASN][1000 genomes]
rs73224549	0.83[ASN][1000 genomes]
rs73234692	0.86[ASN][1000 genomes]
rs73234694	0.85[ASN][1000 genomes]
rs73234696	0.86[ASN][1000 genomes]
rs73234701	0.86[ASN][1000 genomes]
rs73235977	0.91[ASN][1000 genomes]
rs73235978	0.91[ASN][1000 genomes]
rs73235992	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73238006	0.91[ASN][1000 genomes]
rs73239725	0.91[ASN][1000 genomes]
rs73239734	0.91[ASN][1000 genomes]
rs73239736	0.88[ASN][1000 genomes]
rs73239739	0.91[ASN][1000 genomes]
rs73239740	0.91[ASN][1000 genomes]
rs73239743	0.91[ASN][1000 genomes]
rs73239747	0.91[ASN][1000 genomes]
rs73239749	0.91[ASN][1000 genomes]
rs73239751	0.91[ASN][1000 genomes]
rs73239758	0.91[ASN][1000 genomes]
rs73239760	0.91[ASN][1000 genomes]
rs73239761	0.90[ASN][1000 genomes]
rs73239765	0.91[ASN][1000 genomes]
rs73239766	0.91[ASN][1000 genomes]
rs73239768	0.91[ASN][1000 genomes]
rs73239769	0.91[ASN][1000 genomes]
rs73239771	0.91[ASN][1000 genomes]
rs73239772	0.91[ASN][1000 genomes]
rs73239773	0.91[ASN][1000 genomes]
rs73239774	0.91[ASN][1000 genomes]
rs73239777	0.91[ASN][1000 genomes]
rs7680027	0.93[EUR][1000 genomes]
rs7685190	0.91[ASN][1000 genomes]
rs7695368	0.99[EUR][1000 genomes]
rs929557	0.96[EUR][1000 genomes]
rs929558	0.96[EUR][1000 genomes]
rs975668	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs975669	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs975777	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs975778	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537047	chr4:16182060-16375787	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv537048	chr4:16226406-16375787	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16331600-16336000	Weak transcription	Fetal Kidney	kidney

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