Variant report

Variant	rs7680027
Chromosome Location	chr4:16365848-16365849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:16365781-16365862	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:16360973..16364086-chr4:16365820..16368451,4	MCF-7	breast:
2	chr4:16364655..16366735-chr4:16377619..16379236,2	K562	blood:
3	chr4:16361224..16363467-chr4:16364801..16367359,3	MCF-7	breast:

Variant related genes	Relation type
ZEB2P1	TF binding region
ENSG00000249506	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1018126	0.85[ASN][1000 genomes]
rs10489062	0.94[EUR][1000 genomes]
rs11721872	0.95[EUR][1000 genomes]
rs11731242	0.82[ASN][1000 genomes]
rs11731585	0.92[EUR][1000 genomes]
rs11731731	0.95[EUR][1000 genomes]
rs11733994	0.95[EUR][1000 genomes]
rs1558451	0.94[EUR][1000 genomes]
rs16893213	0.85[CHB][hapmap];0.89[GIH][hapmap];0.86[MEX][hapmap];0.81[EUR][1000 genomes]
rs16893226	0.93[EUR][1000 genomes]
rs16893270	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16893280	0.91[EUR][1000 genomes]
rs16893307	0.94[EUR][1000 genomes]
rs16893309	0.94[EUR][1000 genomes]
rs16893310	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17308524	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1909915	0.85[ASN][1000 genomes]
rs1987772	0.94[EUR][1000 genomes]
rs1987773	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2041539	0.93[EUR][1000 genomes]
rs2109886	0.93[EUR][1000 genomes]
rs2312942	0.81[EUR][1000 genomes]
rs2312943	0.94[EUR][1000 genomes]
rs28399788	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34017372	0.94[EUR][1000 genomes]
rs4066790	0.81[EUR][1000 genomes]
rs4484297	0.93[EUR][1000 genomes]
rs4577575	0.86[ASN][1000 genomes]
rs4586928	0.91[EUR][1000 genomes]
rs55823457	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57338172	0.94[EUR][1000 genomes]
rs57499215	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59179944	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60333108	0.94[EUR][1000 genomes]
rs60706134	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61165707	0.94[EUR][1000 genomes]
rs6449226	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6449227	0.94[EUR][1000 genomes]
rs6449228	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6449229	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6449230	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6449232	0.94[EUR][1000 genomes]
rs6449233	0.94[EUR][1000 genomes]
rs6449234	0.94[EUR][1000 genomes]
rs6449236	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67135076	0.94[EUR][1000 genomes]
rs67412386	0.94[EUR][1000 genomes]
rs67798922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815201	0.93[EUR][1000 genomes]
rs6817116	0.95[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs6821068	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6822072	0.94[EUR][1000 genomes]
rs6826508	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6826788	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6834803	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6837983	0.85[ASN][1000 genomes]
rs6844050	0.94[EUR][1000 genomes]
rs73235992	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7695368	0.94[EUR][1000 genomes]
rs929557	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs929558	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs975668	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs975669	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs975777	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs975778	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537047	chr4:16182060-16375787	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv537048	chr4:16226406-16375787	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv999436	chr4:16335379-16375164	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv432582	chr4:16335379-16379580	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv593779	chr4:16336013-16375164	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1000106	chr4:16338191-16375164	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1006449	chr4:16338191-16412544	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1005625	chr4:16339728-16375164	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1004586	chr4:16341873-16375164	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv517721	chr4:16350539-16365848	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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