Variant report

Variant	rs2058816
Chromosome Location	chr16:48831015-48831016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11076579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11076581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs11644191	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap]
rs11860514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs11861256	0.95[CEU][hapmap]
rs11861584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs11861659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12445445	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12448845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9745667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833220	chr16:48747177-48899984	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2750530	chr16:48830679-48831704	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv2750548	chr16:48830679-48831704	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	esv2750714	chr16:48830679-48831704	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv2750773	chr16:48830679-48831704	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48824600-48837600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:48829200-48831400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr16:48829200-48831400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr16:48830000-48831200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr16:48830000-48831400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr16:48830800-48831200	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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