Variant report

Variant	rs2060041
Chromosome Location	chr2:67895976-67895977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10196358	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12478802	0.95[ASN][1000 genomes]
rs1430762	0.84[MEX][hapmap];0.83[TSI][hapmap]
rs72621583	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72621584	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv1007345	chr2:67870225-67980094	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67893200-67903600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr2:67893600-67903000	Weak transcription	Left Ventricle	heart
3	chr2:67893800-67896200	Weak transcription	Fetal Brain Male	brain
4	chr2:67893800-67899200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:67894000-67899000	Weak transcription	Right Ventricle	heart
6	chr2:67894400-67896800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr2:67894600-67896400	Enhancers	Aorta	Aorta
8	chr2:67894800-67899200	Weak transcription	Fetal Lung	lung
9	chr2:67895200-67896800	Weak transcription	Fetal Kidney	kidney
10	chr2:67895400-67897000	Weak transcription	Fetal Muscle Leg	muscle
11	chr2:67895600-67896000	Weak transcription	Fetal Stomach	stomach
12	chr2:67895600-67898200	Weak transcription	Psoas Muscle	Psoas
13	chr2:67895600-67899000	Weak transcription	Right Atrium	heart
14	chr2:67895800-67896800	Enhancers	Hela-S3	cervix
15	chr2:67895800-67897200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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