Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr2:67914370-67914571	HepG2	liver:	n/a	chr2:67914503-67914518 chr2:67914503-67914514 chr2:67914503-67914519 chr2:67914503-67914514 chr2:67914502-67914516 chr2:67914504-67914515
2	MAFK	chr2:67914428-67914645	HepG2	liver:	n/a	chr2:67914503-67914518 chr2:67914503-67914514 chr2:67914503-67914519 chr2:67914503-67914514 chr2:67914502-67914516 chr2:67914504-67914515

Variant related genes	Relation type
ENSG00000235495	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10171129	0.84[CHB][hapmap]
rs10182504	0.93[ASN][1000 genomes]
rs10191839	0.90[CHB][hapmap]
rs10194664	0.86[CHB][hapmap]
rs10194853	0.93[ASN][1000 genomes]
rs10195055	0.90[CHB][hapmap]
rs10195947	0.90[CHB][hapmap]
rs10196069	0.89[CHB][hapmap]
rs10204184	0.90[CHB][hapmap]
rs10210853	0.90[CHB][hapmap]
rs11688644	0.89[CHB][hapmap]
rs1367461	0.90[CHB][hapmap]
rs1430762	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1549779	0.90[CHB][hapmap]
rs17034097	0.92[ASN][1000 genomes]
rs2060041	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4671829	0.90[CHB][hapmap]
rs6743547	0.98[ASN][1000 genomes]
rs72621583	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72621587	0.91[ASN][1000 genomes]
rs9309403	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv1007345	chr2:67870225-67980094	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv834250	chr2:67897722-68051532	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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