Variant report
| Variant | rs6743547 |
|---|---|
| Chromosome Location | chr2:67917592-67917593 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10171129 | 0.84[CHB][hapmap] |
| rs10182504 | 0.85[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10191839 | 0.90[CHB][hapmap] |
| rs10194664 | 0.86[CHB][hapmap] |
| rs10194853 | 0.81[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10195055 | 0.90[CHB][hapmap] |
| rs10195947 | 0.90[CHB][hapmap] |
| rs10196069 | 0.89[CHB][hapmap] |
| rs10196358 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs10204184 | 0.90[CHB][hapmap] |
| rs10210853 | 0.90[CHB][hapmap] |
| rs11688644 | 0.89[CHB][hapmap] |
| rs1367461 | 0.90[CHB][hapmap] |
| rs1430762 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1549779 | 0.90[CHB][hapmap] |
| rs17034097 | 0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4671829 | 0.90[CHB][hapmap] |
| rs72621587 | 0.93[ASN][1000 genomes] |
| rs7586232 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs9309403 | 0.89[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534389 | chr2:67388428-68225338 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 36 gene(s) | inside rSNPs | diseases |
| 2 | nsv1007345 | chr2:67870225-67980094 | Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv834250 | chr2:67897722-68051532 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:67917400-67921800 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
