Variant report
| Variant | rs72621587 |
|---|---|
| Chromosome Location | chr2:67914445-67914446 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr2:67914370-67914571 | HepG2 | liver: | n/a | chr2:67914503-67914518 chr2:67914503-67914514 chr2:67914503-67914519 chr2:67914503-67914514 chr2:67914502-67914516 chr2:67914504-67914515 |
| 2 | MAFK | chr2:67914428-67914645 | HepG2 | liver: | n/a | chr2:67914503-67914518 chr2:67914503-67914514 chr2:67914503-67914519 chr2:67914503-67914514 chr2:67914502-67914516 chr2:67914504-67914515 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000235495 | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10182504 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10194853 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10196358 | 0.91[ASN][1000 genomes] |
| rs12162351 | 0.88[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs12478802 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1430762 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17034097 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2861712 | 0.82[AMR][1000 genomes] |
| rs6743547 | 0.93[ASN][1000 genomes] |
| rs72621576 | 0.81[AFR][1000 genomes] |
| rs72621582 | 0.81[AMR][1000 genomes] |
| rs72621583 | 0.82[AMR][1000 genomes] |
| rs72621586 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534389 | chr2:67388428-68225338 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 36 gene(s) | inside rSNPs | diseases |
| 2 | nsv1007345 | chr2:67870225-67980094 | Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv834250 | chr2:67897722-68051532 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
