Variant report

Variant	rs72621576
Chromosome Location	chr2:67873407-67873408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67871857..67874448-chr2:67877443..67879298,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12162351	0.83[AFR][1000 genomes]
rs12476893	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1430783	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1430784	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17034087	0.93[ASN][1000 genomes]
rs1897182	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1897183	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1897184	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2902028	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58185557	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72621575	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72621577	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72621578	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72621579	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72621580	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72621581	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72621582	0.97[ASN][1000 genomes]
rs72621584	0.88[ASN][1000 genomes]
rs72621586	0.88[AFR][1000 genomes]
rs72621587	0.81[AFR][1000 genomes]
rs972901	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv1007345	chr2:67870225-67980094	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67866800-67884200	Weak transcription	Aorta	Aorta
2	chr2:67869400-67873600	Weak transcription	Pancreas	Pancrea
3	chr2:67871400-67873600	Enhancers	Fetal Intestine Large	intestine
4	chr2:67871600-67873800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:67872000-67873600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:67872000-67873600	Weak transcription	Right Atrium	heart
7	chr2:67872400-67873800	Enhancers	HSMM	muscle
8	chr2:67872400-67876200	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:67872600-67873600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:67872600-67873600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr2:67872600-67874000	Enhancers	Stomach Smooth Muscle	stomach
12	chr2:67872800-67873800	Weak transcription	Stomach Mucosa	stomach
13	chr2:67872800-67874000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr2:67872800-67875600	Weak transcription	Fetal Lung	lung
15	chr2:67872800-67876800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr2:67873000-67873800	Weak transcription	Hela-S3	cervix
17	chr2:67873000-67873800	Enhancers	HSMMtube	muscle
18	chr2:67873200-67873600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:67873200-67874400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
20	chr2:67873200-67876400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr2:67873200-67877000	Weak transcription	Gastric	stomach
22	chr2:67873400-67873600	Enhancers	Fetal Heart	heart
23	chr2:67873400-67873600	Enhancers	Fetal Muscle Trunk	muscle
24	chr2:67873400-67873800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr2:67873400-67873800	Enhancers	Right Ventricle	heart
26	chr2:67873400-67874000	Enhancers	Left Ventricle	heart
27	chr2:67873400-67874000	Enhancers	Skeletal Muscle Female	skeletal muscle

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