Variant report

Variant	rs72621582
Chromosome Location	chr2:67886913-67886914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12162351	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12476893	0.92[ASN][1000 genomes]
rs1430783	0.90[ASN][1000 genomes]
rs1430784	0.92[ASN][1000 genomes]
rs17034087	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17034147	0.82[AMR][1000 genomes]
rs17040171	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1897182	0.92[ASN][1000 genomes]
rs1897183	0.92[ASN][1000 genomes]
rs1897184	0.92[ASN][1000 genomes]
rs2861712	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2902028	0.92[ASN][1000 genomes]
rs58113451	0.82[AMR][1000 genomes]
rs58185557	0.92[ASN][1000 genomes]
rs60205859	0.82[AMR][1000 genomes]
rs72621575	0.92[ASN][1000 genomes]
rs72621576	0.97[ASN][1000 genomes]
rs72621577	0.92[ASN][1000 genomes]
rs72621578	0.92[ASN][1000 genomes]
rs72621579	0.92[ASN][1000 genomes]
rs72621580	0.92[ASN][1000 genomes]
rs72621581	0.92[ASN][1000 genomes]
rs72621584	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72621585	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72621586	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72621587	0.81[AMR][1000 genomes]
rs972901	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv1007345	chr2:67870225-67980094	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3337269	chr2:67886628-67887092	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67884600-67887600	Weak transcription	Aorta	Aorta
2	chr2:67884800-67888000	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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