Variant report

Variant	rs2060719
Chromosome Location	chr7:128331092-128331093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:128325647..128328540-chr7:128329512..128331138,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM71F2-4	chr7:128330505-128331771	ENSG00000271344.1

Variant related genes	Relation type
ENSG00000270810	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10239393	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262251	1.00[ASW][hapmap];0.90[MKK][hapmap];0.91[AFR][1000 genomes]
rs10808232	1.00[AMR][1000 genomes]
rs2060716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562729	1.00[AMR][1000 genomes]
rs2562739	1.00[AMR][1000 genomes]
rs2732383	1.00[AMR][1000 genomes]
rs2732404	1.00[AMR][1000 genomes]
rs2732410	1.00[AMR][1000 genomes]
rs2732411	1.00[AMR][1000 genomes]
rs2732430	1.00[AMR][1000 genomes]
rs28770797	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2896406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3993496	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4377901	1.00[AMR][1000 genomes]
rs4728119	1.00[AMR][1000 genomes]
rs4728121	1.00[AMR][1000 genomes]
rs4728122	1.00[AMR][1000 genomes]
rs4731499	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57829455	1.00[AMR][1000 genomes]
rs6467183	1.00[AMR][1000 genomes]
rs6947542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6950246	1.00[AMR][1000 genomes]
rs6951154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6957806	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6973538	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6975178	1.00[AMR][1000 genomes]
rs6979279	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6979742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7777883	1.00[AMR][1000 genomes]
rs7786173	1.00[AMR][1000 genomes]
rs9690224	1.00[AMR][1000 genomes]
rs9692127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427806	chr7:128179989-128428182	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv966738	chr7:128325654-128339129	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128302400-128337200	Weak transcription	Gastric	stomach
2	chr7:128313400-128331200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:128313600-128337200	Weak transcription	Right Atrium	heart
4	chr7:128320200-128332000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:128320200-128337200	Weak transcription	NHLF	lung
6	chr7:128321000-128332000	Weak transcription	Fetal Brain Male	brain
7	chr7:128322200-128333000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:128323400-128337200	Weak transcription	Left Ventricle	heart
9	chr7:128324200-128337200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:128324400-128337200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:128325600-128333800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:128325600-128337000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:128326000-128337200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:128326800-128331200	Weak transcription	Fetal Brain Female	brain
15	chr7:128328000-128331200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:128328000-128331600	Weak transcription	Aorta	Aorta
17	chr7:128328000-128332800	Weak transcription	Brain Anterior Caudate	brain
18	chr7:128328000-128333400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:128328000-128334000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:128328000-128334800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:128328000-128337000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:128328000-128337200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:128328000-128337200	Weak transcription	HSMMtube	muscle
24	chr7:128328000-128337200	Weak transcription	NH-A	brain
25	chr7:128328200-128337000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:128328800-128337200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:128329000-128337200	Weak transcription	HSMM	muscle
28	chr7:128329400-128333400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:128329400-128337200	Weak transcription	Pancreas	Pancrea
30	chr7:128329800-128331400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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