Variant report

Variant	rs6951154
Chromosome Location	chr7:128347200-128347201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:128346237..128350299-chr7:128378242..128382310,4	K562	blood:
2	chr7:128346113..128353140-chr7:128377714..128381349,8	K562	blood:

Variant related genes	Relation type
ENSG00000128595	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10239393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262251	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs10808232	1.00[AMR][1000 genomes]
rs2060716	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2060719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2562739	1.00[AMR][1000 genomes]
rs2732383	1.00[AMR][1000 genomes]
rs2732411	1.00[AMR][1000 genomes]
rs2732430	1.00[AMR][1000 genomes]
rs28770797	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2896406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3993496	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4377901	1.00[AMR][1000 genomes]
rs4728119	1.00[AMR][1000 genomes]
rs4728121	1.00[AMR][1000 genomes]
rs4728122	1.00[AMR][1000 genomes]
rs4731499	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6467183	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6947542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6950246	1.00[AMR][1000 genomes]
rs6957806	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6973538	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6975178	1.00[AMR][1000 genomes]
rs6979279	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6979742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7777883	1.00[AMR][1000 genomes]
rs7786173	1.00[AMR][1000 genomes]
rs9690224	1.00[AMR][1000 genomes]
rs9692127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427806	chr7:128179989-128428182	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1016979	chr7:128333070-128534438	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128338600-128349000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:128339000-128358800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:128344000-128348200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:128344000-128349000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:128344200-128348600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:128344400-128348600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:128345200-128350200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:128345200-128350200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr7:128345400-128348000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:128345400-128348000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:128345400-128348400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:128345400-128348600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:128345400-128348600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:128345400-128348800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:128346000-128349000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:128346200-128350400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr7:128346400-128350200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:128346400-128350200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr7:128346400-128350200	Weak transcription	NHEK	skin
20	chr7:128346400-128353400	Weak transcription	HMEC	breast
21	chr7:128346400-128354000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:128346600-128347200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:128346600-128353400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:128346800-128348600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr7:128347000-128348000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:128347000-128348600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:128347200-128347800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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