Variant report

Variant	rs2061647
Chromosome Location	chr6:77541295-77541296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1350404	0.82[AFR][1000 genomes]
rs1457943	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4708290	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6909066	1.00[EUR][1000 genomes]
rs6921568	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6921780	1.00[EUR][1000 genomes]
rs9341600	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9343503	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9352388	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9359222	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9443292	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77540600-77543600	Enhancers	NHEK	skin
2	chr6:77541000-77544400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:77541200-77541800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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