Variant report
Variant | rs1350404 |
---|---|
Chromosome Location | chr6:77494340-77494341 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12661295 | 0.88[ASN][1000 genomes] |
rs1457943 | 0.81[AFR][1000 genomes] |
rs1462469 | 0.91[ASN][1000 genomes] |
rs1598865 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1598866 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2061647 | 0.82[AFR][1000 genomes] |
rs34264360 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs35512517 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs35822653 | 0.92[ASN][1000 genomes] |
rs4708290 | 0.82[AFR][1000 genomes] |
rs68040563 | 0.89[ASN][1000 genomes] |
rs6921568 | 0.94[AFR][1000 genomes] |
rs71563003 | 0.81[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs9341600 | 0.88[AFR][1000 genomes] |
rs9343499 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9352388 | 0.94[AFR][1000 genomes] |
rs9359222 | 0.81[AFR][1000 genomes] |
rs9359223 | 0.93[ASN][1000 genomes] |
rs9361140 | 0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1019520 | chr6:77355212-77875164 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv538321 | chr6:77355212-77875164 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv886218 | chr6:77415155-77500526 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv886220 | chr6:77415155-77505717 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | nsv886219 | chr6:77415155-77515516 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:77487400-77498800 | Weak transcription | Pancreas | Pancrea |