Variant report

Variant	rs35822653
Chromosome Location	chr6:77505579-77505580
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12660959	0.87[EUR][1000 genomes]
rs12661295	0.95[ASN][1000 genomes]
rs1350404	0.92[ASN][1000 genomes]
rs1350941	0.87[EUR][1000 genomes]
rs1462469	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1598865	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1598866	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34264360	0.89[AMR][1000 genomes]
rs35512517	0.89[AMR][1000 genomes]
rs68040563	0.97[ASN][1000 genomes]
rs71563003	0.86[AMR][1000 genomes]
rs9343499	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9343507	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9350675	0.87[EUR][1000 genomes]
rs9352390	0.87[EUR][1000 genomes]
rs9359223	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9361140	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv886220	chr6:77415155-77505717	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886219	chr6:77415155-77515516	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77499600-77530800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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