Variant report
| Variant | rs9361140 |
|---|---|
| Chromosome Location | chr6:77511182-77511183 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12660959 | 0.87[EUR][1000 genomes] |
| rs12661295 | 0.94[ASN][1000 genomes] |
| rs1350404 | 0.93[ASN][1000 genomes] |
| rs1350941 | 0.87[EUR][1000 genomes] |
| rs1462469 | 0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1598865 | 0.81[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1598866 | 0.81[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs34264360 | 0.81[AMR][1000 genomes] |
| rs35512517 | 0.81[AMR][1000 genomes] |
| rs35822653 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs68040563 | 0.96[ASN][1000 genomes] |
| rs73757997 | 0.91[AFR][1000 genomes] |
| rs73758001 | 0.91[AFR][1000 genomes] |
| rs9343499 | 0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9343507 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9350675 | 0.87[EUR][1000 genomes] |
| rs9352390 | 0.87[EUR][1000 genomes] |
| rs9359223 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9443294 | 0.95[AFR][1000 genomes] |
| rs9443295 | 0.95[AFR][1000 genomes] |
| rs9443296 | 0.93[AFR][1000 genomes] |
| rs9447802 | 0.88[AFR][1000 genomes] |
| rs9447807 | 0.95[AFR][1000 genomes] |
| rs9447808 | 0.95[AFR][1000 genomes] |
| rs9447811 | 0.91[AFR][1000 genomes] |
| rs9447815 | 0.93[AFR][1000 genomes] |
| rs9447816 | 0.93[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019520 | chr6:77355212-77875164 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv538321 | chr6:77355212-77875164 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv886219 | chr6:77415155-77515516 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv830701 | chr6:77509152-77678602 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:77499600-77530800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
