Variant report

Variant	rs73758001
Chromosome Location	chr6:77540957-77540958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs73757997	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9361140	0.91[AFR][1000 genomes]
rs9443294	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443295	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443296	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447802	0.88[AFR][1000 genomes]
rs9447807	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447808	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447811	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447815	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447858	1.00[AMR][1000 genomes]
rs9447863	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77540400-77541000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:77540600-77543600	Enhancers	NHEK	skin
3	chr6:77540800-77541200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links