Variant report

Variant	rs9343507
Chromosome Location	chr6:77519881-77519882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11969816	0.96[ASN][1000 genomes]
rs12174426	0.96[ASN][1000 genomes]
rs12660959	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13211725	0.94[ASN][1000 genomes]
rs1350941	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1462469	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1598865	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1598866	0.86[AMR][1000 genomes]
rs34264360	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35512517	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35822653	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68172709	0.96[ASN][1000 genomes]
rs71563003	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9343499	0.86[AMR][1000 genomes]
rs9343513	0.96[ASN][1000 genomes]
rs9350675	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9350677	0.96[ASN][1000 genomes]
rs9352390	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9352400	0.96[ASN][1000 genomes]
rs9359223	0.88[EUR][1000 genomes]
rs9361140	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9361152	0.96[ASN][1000 genomes]
rs9361153	0.96[ASN][1000 genomes]
rs9361156	0.96[ASN][1000 genomes]
rs9361157	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77499600-77530800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:77519600-77520400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:77519800-77520200	ZNF genes & repeats	Pancreas	Pancrea
4	chr6:77519800-77520800	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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