Variant report

Variant	rs11969816
Chromosome Location	chr6:77552414-77552415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10455322	1.00[AFR][1000 genomes]
rs12174426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191933	1.00[AFR][1000 genomes]
rs12192489	1.00[AFR][1000 genomes]
rs12660959	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12661295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13211725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1335436	1.00[AFR][1000 genomes]
rs1350941	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1414184	1.00[AFR][1000 genomes]
rs1462469	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1570260	1.00[AFR][1000 genomes]
rs1598865	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1598866	1.00[AFR][1000 genomes]
rs1981128	1.00[AFR][1000 genomes]
rs34264360	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs35236070	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs35512517	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs68040563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68139108	1.00[AFR][1000 genomes]
rs68172709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71563003	0.92[ASN][1000 genomes]
rs9341621	1.00[AFR][1000 genomes]
rs9343499	1.00[AFR][1000 genomes]
rs9343507	0.96[ASN][1000 genomes]
rs9343513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9343519	0.82[AMR][1000 genomes]
rs9350675	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9350677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9350684	1.00[AFR][1000 genomes]
rs9350686	1.00[AFR][1000 genomes]
rs9352390	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9352400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9352403	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9359223	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9359230	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9361152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361162	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77545400-77552800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:77548200-77553200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:77548400-77553600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:77552200-77553200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:77552400-77553400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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