Variant report

Variant	rs9352403
Chromosome Location	chr6:77574881-77574882
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10455322	1.00[AFR][1000 genomes]
rs11969816	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12174426	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12191933	1.00[AFR][1000 genomes]
rs12192489	1.00[AFR][1000 genomes]
rs12661295	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13211725	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13216597	0.80[AMR][1000 genomes]
rs1335436	1.00[AFR][1000 genomes]
rs1414184	1.00[AFR][1000 genomes]
rs1462469	1.00[AFR][1000 genomes]
rs1570260	1.00[AFR][1000 genomes]
rs1598865	1.00[AFR][1000 genomes]
rs1598866	1.00[AFR][1000 genomes]
rs1981128	1.00[AFR][1000 genomes]
rs34264360	1.00[AFR][1000 genomes]
rs35236070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35512517	1.00[AFR][1000 genomes]
rs68040563	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs68139108	1.00[AFR][1000 genomes]
rs68172709	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9341621	1.00[AFR][1000 genomes]
rs9343499	1.00[AFR][1000 genomes]
rs9343513	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9343519	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9350675	1.00[AFR][1000 genomes]
rs9350677	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9350684	1.00[AFR][1000 genomes]
rs9350686	1.00[AFR][1000 genomes]
rs9352390	1.00[AFR][1000 genomes]
rs9352400	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9359223	1.00[AFR][1000 genomes]
rs9359230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361152	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9361153	0.82[AMR][1000 genomes]
rs9361156	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9361157	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9361162	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv432924	chr6:77566201-77617213	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3387181	chr6:77571282-77594741	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv528107	chr6:77573235-77576861	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77571600-77579000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:77573600-77575600	Weak transcription	Osteobl	bone
3	chr6:77573800-77575600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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