Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11969816	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12174426	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12660959	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12661295	0.89[EUR][1000 genomes]
rs13211725	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1462469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1598865	0.97[ASN][1000 genomes]
rs34264360	0.94[ASN][1000 genomes]
rs35512517	0.94[ASN][1000 genomes]
rs35822653	0.87[EUR][1000 genomes]
rs68040563	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68172709	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71563003	0.94[ASN][1000 genomes]
rs9343507	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9343513	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9350675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9350677	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9352390	0.94[ASN][1000 genomes]
rs9352400	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9361140	0.87[EUR][1000 genomes]
rs9361152	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9361153	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9361156	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9361157	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77499600-77530800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:77520400-77527200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:77524000-77525200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:77524200-77525000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:77524200-77525200	Enhancers	Adipose Nuclei	Adipose
6	chr6:77524400-77524600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:77524400-77525000	Enhancers	Fetal Intestine Small	intestine
8	chr6:77524400-77525600	Enhancers	Liver	Liver

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