Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12111242	0.89[ASN][1000 genomes]
rs12525313	0.84[ASN][1000 genomes]
rs2090342	0.89[ASN][1000 genomes]
rs2203591	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2203592	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2358166	0.80[ASN][1000 genomes]
rs4504498	0.84[ASN][1000 genomes]
rs4946525	0.84[ASN][1000 genomes]
rs4946527	0.90[ASN][1000 genomes]
rs6903278	0.85[ASN][1000 genomes]
rs6909990	0.84[ASN][1000 genomes]
rs7755171	0.85[ASN][1000 genomes]
rs7760098	0.85[ASN][1000 genomes]
rs7764883	0.85[ASN][1000 genomes]
rs7772276	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9320780	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320785	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9320787	0.85[ASN][1000 genomes]
rs9320788	0.85[ASN][1000 genomes]
rs9401351	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv886591	chr6:121260089-121398535	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886592	chr6:121260089-121425387	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121253200-121260800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:121254600-121261600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:121259000-121260800	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:121259400-121260600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:121259600-121260600	Enhancers	Primary B cells from cord blood	blood
6	chr6:121259600-121260800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:121259800-121260400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:121259800-121260600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:121260000-121260800	Enhancers	GM12878-XiMat	blood
10	chr6:121260200-121260600	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr6:121260200-121260800	Enhancers	Stomach Mucosa	stomach

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