Variant report

Variant	rs4946527
Chromosome Location	chr6:121252677-121252678
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12111242	0.84[ASN][1000 genomes]
rs12525313	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2063878	0.90[ASN][1000 genomes]
rs2090342	0.84[ASN][1000 genomes]
rs2203591	0.84[ASN][1000 genomes]
rs2203592	0.84[ASN][1000 genomes]
rs2358166	0.84[ASN][1000 genomes]
rs4504498	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4946525	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6569171	0.85[ASN][1000 genomes]
rs6903278	0.91[ASN][1000 genomes]
rs7755171	0.91[ASN][1000 genomes]
rs7760098	0.91[ASN][1000 genomes]
rs7764883	0.91[ASN][1000 genomes]
rs9320780	0.90[ASN][1000 genomes]
rs9320785	0.85[ASN][1000 genomes]
rs9320787	0.91[ASN][1000 genomes]
rs9320788	0.91[ASN][1000 genomes]
rs9387907	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121252000-121253000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr6:121252000-121253000	Enhancers	Stomach Mucosa	stomach
3	chr6:121252200-121252800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:121252200-121253200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:121252400-121253200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr6:121252400-121253400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:121252600-121252800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr6:121252600-121253000	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr6:121252600-121253000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
10	chr6:121252600-121253200	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:121252600-121253200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr6:121252600-121253600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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