Variant report

Variant	rs2065713
Chromosome Location	chr6:150381640-150381641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150379821..150382555-chr6:150387863..150390602,3	MCF-7	breast:
2	chr6:150380000..150382934-chr6:150383185..150385012,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131019	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2009345	0.92[CEU][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2343271	0.81[ASN][1000 genomes]
rs4869816	0.83[ASN][1000 genomes]
rs550193	0.83[ASN][1000 genomes]
rs6920314	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6941524	1.00[ASN][1000 genomes]
rs912556	0.81[ASN][1000 genomes]
rs932744	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs9371692	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9371693	0.92[CEU][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9397622	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv7375	chr6:150324114-150388625	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3344440	chr6:150324131-150388650	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3323918	chr6:150327978-150392099	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv886767	chr6:150335407-150400488	Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1026236	chr6:150360882-150408946	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150376000-150388800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:150377800-150382000	Weak transcription	NH-A	brain
3	chr6:150377800-150389400	Weak transcription	HSMMtube	muscle
4	chr6:150378600-150389400	Weak transcription	Right Atrium	heart
5	chr6:150378800-150384600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:150379000-150382200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:150379400-150384600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:150379600-150382200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:150379600-150382600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:150379600-150389200	Weak transcription	Hela-S3	cervix
11	chr6:150379800-150384600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:150379800-150384600	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:150380000-150389600	Weak transcription	Aorta	Aorta
14	chr6:150380200-150384800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:150380200-150389400	Weak transcription	HSMM	muscle
16	chr6:150380400-150381800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:150380400-150384800	Weak transcription	Fetal Intestine Small	intestine
18	chr6:150380600-150389200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:150380800-150381800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:150380800-150383400	Weak transcription	Osteobl	bone
21	chr6:150380800-150384600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:150380800-150387800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:150380800-150389200	Weak transcription	HMEC	breast
24	chr6:150380800-150389400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:150381000-150381800	Enhancers	Primary T cells fromperipheralblood	blood
26	chr6:150381000-150389200	Weak transcription	Lung	lung
27	chr6:150381200-150381800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:150381200-150382000	Enhancers	Adipose Nuclei	Adipose
29	chr6:150381200-150382000	Enhancers	Spleen	Spleen
30	chr6:150381400-150382000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:150381400-150382000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:150381400-150382000	Enhancers	Placenta	Placenta
33	chr6:150381400-150387200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:150381400-150389200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:150381600-150389200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr6:150381600-150389200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr6:150381600-150389200	Weak transcription	Right Ventricle	heart
38	chr6:150381600-150389400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:150381600-150389400	Weak transcription	Primary hematopoietic stem cells	blood

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