Variant report

Variant	rs9371693
Chromosome Location	chr6:150389435-150389436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150378184..150381057-chr6:150388223..150390154,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2009345	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[LWK][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2065713	0.92[CEU][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2343271	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4869816	0.91[CHB][hapmap];0.92[ASN][1000 genomes]
rs550193	0.95[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6920314	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6941524	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs912556	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs932744	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9371692	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9397137	0.82[CHB][hapmap]
rs9397622	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3323918	chr6:150327978-150392099	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv886767	chr6:150335407-150400488	Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1026236	chr6:150360882-150408946	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150380000-150389600	Weak transcription	Aorta	Aorta
2	chr6:150386600-150389600	Weak transcription	NHEK	skin
3	chr6:150387000-150389600	Weak transcription	Gastric	stomach
4	chr6:150388600-150389600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:150388600-150390000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:150388800-150389600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr6:150389200-150389600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:150389200-150389600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:150389200-150389600	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:150389200-150389600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr6:150389200-150389600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:150389200-150389600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:150389200-150389600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr6:150389200-150389600	Enhancers	Esophagus	oesophagus
15	chr6:150389200-150389600	Enhancers	Fetal Intestine Large	intestine
16	chr6:150389200-150389600	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr6:150389200-150389600	Enhancers	Placenta	Placenta
18	chr6:150389200-150389600	Enhancers	Lung	lung
19	chr6:150389200-150389600	Enhancers	Pancreas	Pancrea
20	chr6:150389200-150389600	Enhancers	Psoas Muscle	Psoas
21	chr6:150389200-150389600	Enhancers	Right Ventricle	heart
22	chr6:150389200-150389600	Enhancers	Stomach Mucosa	stomach
23	chr6:150389200-150389600	Flanking Active TSS	Hela-S3	cervix
24	chr6:150389200-150389800	Enhancers	Spleen	Spleen
25	chr6:150389200-150389800	Flanking Active TSS	NHLF	lung
26	chr6:150389200-150389800	Flanking Active TSS	Osteobl	bone
27	chr6:150389200-150390000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:150389200-150390200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:150389200-150390600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:150389200-150390800	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr6:150389200-150391000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
32	chr6:150389400-150389600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:150389400-150389600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:150389400-150389600	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
35	chr6:150389400-150389600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
36	chr6:150389400-150389600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:150389400-150389600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:150389400-150389600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:150389400-150389600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr6:150389400-150389600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
41	chr6:150389400-150389600	Enhancers	Primary B cells from cord blood	blood
42	chr6:150389400-150389600	Flanking Active TSS	Primary T cells from cord blood	blood
43	chr6:150389400-150389600	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr6:150389400-150389600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:150389400-150389600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr6:150389400-150389600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr6:150389400-150389600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:150389400-150389600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:150389400-150389600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:150389400-150389600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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