Variant report

Variant	rs2065862
Chromosome Location	chr10:98889989-98889990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98889238..98892726-chr10:98895337..98898197,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2636773	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636782	0.84[CHB][hapmap]
rs2636783	0.85[CHB][hapmap]
rs2784934	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784936	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817698	0.84[CHB][hapmap]
rs2817706	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2817708	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817712	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98873600-98890000	Strong transcription	Fetal Thymus	thymus
2	chr10:98880200-98912800	Weak transcription	Thymus	Thymus
3	chr10:98880400-98891600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:98887200-98891400	Enhancers	Brain Angular Gyrus	brain
5	chr10:98887200-98892800	Enhancers	Brain Germinal Matrix	brain
6	chr10:98887200-98895000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:98887400-98892200	Enhancers	Fetal Brain Male	brain
8	chr10:98887400-98894200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:98888400-98890800	Weak transcription	Lung	lung
10	chr10:98888600-98890000	Weak transcription	Brain Anterior Caudate	brain
11	chr10:98888600-98890800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:98888600-98892600	Enhancers	Fetal Lung	lung
13	chr10:98888600-98893800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:98888800-98892600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:98888800-98893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:98888800-98894600	Weak transcription	Fetal Brain Female	brain
17	chr10:98889000-98892400	Enhancers	Brain Cingulate Gyrus	brain
18	chr10:98889400-98890000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:98889600-98890800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:98889800-98890000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:98889800-98890000	Bivalent Enhancer	Fetal Heart	heart
22	chr10:98889800-98890600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:98889800-98890800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:98889800-98891200	Weak transcription	Right Ventricle	heart

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