Variant report

Variant	rs2784936
Chromosome Location	chr10:98888164-98888165
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98886302..98888619-chr10:98915169..98916760,2	K562	blood:

Variant related genes	Relation type
ENSG00000269891	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2065862	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636773	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2784934	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817706	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2817708	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817712	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98873600-98890000	Strong transcription	Fetal Thymus	thymus
2	chr10:98880200-98912800	Weak transcription	Thymus	Thymus
3	chr10:98880400-98891600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:98882400-98889400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:98887000-98888800	Genic enhancers	Fetal Brain Female	brain
6	chr10:98887200-98891400	Enhancers	Brain Angular Gyrus	brain
7	chr10:98887200-98892800	Enhancers	Brain Germinal Matrix	brain
8	chr10:98887200-98895000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:98887400-98889600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:98887400-98892200	Enhancers	Fetal Brain Male	brain
11	chr10:98887400-98894200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr10:98887600-98888200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:98887600-98888600	Enhancers	Brain Anterior Caudate	brain
14	chr10:98887600-98888800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:98887600-98889400	Weak transcription	Right Ventricle	heart
16	chr10:98887600-98889800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:98887800-98888400	Enhancers	Fetal Muscle Trunk	muscle
18	chr10:98887800-98888600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:98887800-98888600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:98887800-98889000	Enhancers	Brain Hippocampus Middle	brain
21	chr10:98887800-98889800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:98888000-98888800	Enhancers	Brain Substantia Nigra	brain
23	chr10:98888000-98889000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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