Variant report

Variant	rs206690
Chromosome Location	chr6:164488728-164488729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs183268	1.00[AMR][1000 genomes]
rs205995	0.88[AFR][1000 genomes]
rs205997	1.00[AMR][1000 genomes]
rs206000	1.00[AMR][1000 genomes]
rs206689	1.00[AMR][1000 genomes]
rs206698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs206724	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs206725	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs206727	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs369452	1.00[AMR][1000 genomes]
rs373183	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs374320	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs383614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs383720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs384008	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs394999	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs395240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs409958	1.00[AMR][1000 genomes]
rs410781	1.00[AMR][1000 genomes]
rs413058	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs444176	1.00[AMR][1000 genomes]
rs445024	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs446252	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs449084	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs450401	1.00[AMR][1000 genomes]
rs451353	1.00[AMR][1000 genomes]
rs454476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs655061	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1019703	chr6:164424683-164488780	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv970732	chr6:164480301-164496822	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164484600-164490400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:164484800-164492000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:164484800-164502800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:164487400-164490800	Enhancers	Fetal Muscle Leg	muscle
5	chr6:164488200-164493800	Weak transcription	Adipose Nuclei	Adipose
6	chr6:164488400-164488800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:164488600-164493200	Enhancers	Cortex derived primary cultured neurospheres	brain

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