Variant report

Variant	rs206725
Chromosome Location	chr6:164500544-164500545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164499576..164502475-chr6:164505430..164508484,3	K562	blood:
2	chr6:164499576..164501564-chr6:164505270..164508227,3	K562	blood:

Variant related genes	Relation type
ENSG00000260422	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs183268	1.00[AMR][1000 genomes]
rs205995	0.88[AFR][1000 genomes]
rs205997	1.00[AMR][1000 genomes]
rs206000	1.00[AMR][1000 genomes]
rs206689	1.00[AMR][1000 genomes]
rs206690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs206698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs206724	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs206727	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs369452	1.00[AMR][1000 genomes]
rs373183	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs374320	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs383614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs383720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs384008	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs394999	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs395240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs409958	1.00[AMR][1000 genomes]
rs410781	1.00[AMR][1000 genomes]
rs413058	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs444176	1.00[AMR][1000 genomes]
rs445024	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs446252	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs449084	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs450401	1.00[AMR][1000 genomes]
rs451353	1.00[AMR][1000 genomes]
rs454476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs655061	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164484800-164502800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:164492600-164504800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:164499200-164505200	Weak transcription	Right Ventricle	heart
4	chr6:164499400-164503800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:164499400-164505400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:164499600-164501600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:164499600-164506000	Weak transcription	HSMMtube	muscle
8	chr6:164499800-164503400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:164500000-164502200	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:164500000-164505200	Weak transcription	Brain Anterior Caudate	brain
11	chr6:164500200-164500600	Enhancers	Lung	lung
12	chr6:164500200-164503000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:164500400-164500600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:164500400-164505200	Weak transcription	Right Atrium	heart

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