Variant report

Variant	rs2068381
Chromosome Location	chr1:67012188-67012189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10789207	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10789208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12083791	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12093875	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12144047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1338197	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17129012	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1856317	0.92[JPT][hapmap]
rs2312151	0.95[CEU][hapmap];0.87[CHB][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4655617	1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6662330	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6690186	0.86[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs72677052	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7516148	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2068381	TCTEX1D1	cis	parietal	SCAN
rs2068381	TCTEX1D1	cis	cerebellum	SCAN

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67000400-67022000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:67000800-67029800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:67001200-67022000	Weak transcription	Right Ventricle	heart
4	chr1:67003000-67012400	Enhancers	Brain Hippocampus Middle	brain
5	chr1:67004200-67012200	Enhancers	NHDF-Ad	bronchial
6	chr1:67004200-67012400	Enhancers	Fetal Heart	heart
7	chr1:67004800-67012400	Enhancers	Brain Substantia Nigra	brain
8	chr1:67005400-67012200	Enhancers	Brain Angular Gyrus	brain
9	chr1:67007000-67021800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:67007200-67018000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:67007800-67012400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:67008000-67012400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:67008400-67018000	Weak transcription	Lung	lung
14	chr1:67008600-67012600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:67008600-67013000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:67009000-67019600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr1:67009400-67013800	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr1:67009600-67018200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:67009600-67019600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:67009800-67028200	Weak transcription	Brain Germinal Matrix	brain
21	chr1:67010000-67013400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr1:67010000-67018600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr1:67010000-67018600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr1:67010000-67029000	Weak transcription	Fetal Kidney	kidney
25	chr1:67010800-67012400	Enhancers	Fetal Lung	lung
26	chr1:67010800-67018600	Weak transcription	Osteobl	bone
27	chr1:67011000-67013200	Enhancers	NHLF	lung
28	chr1:67011000-67028000	Weak transcription	HUVEC	blood vessel
29	chr1:67011200-67013200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr1:67011200-67013200	Weak transcription	Brain Anterior Caudate	brain
31	chr1:67011200-67013200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr1:67011200-67021800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:67011200-67022000	Weak transcription	Pancreas	Pancrea
34	chr1:67011400-67012200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr1:67011400-67013200	Weak transcription	Aorta	Aorta
36	chr1:67011400-67017800	Weak transcription	Left Ventricle	heart
37	chr1:67011600-67017600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:67011800-67029800	Weak transcription	Fetal Brain Male	brain
39	chr1:67012000-67013200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:67012000-67013200	Weak transcription	Right Atrium	heart

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