Variant report

Variant	rs1338197
Chromosome Location	chr1:66987276-66987277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10789207	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789208	0.95[CEU][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12083791	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12093875	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144047	0.95[CEU][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17129012	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17472890	0.89[ASN][1000 genomes]
rs2068381	0.95[CEU][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2312151	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655617	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs6662330	0.95[CEU][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72677052	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516148	0.90[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518465	chr1:66986377-66988586	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66985800-66988000	Enhancers	A549	lung
2	chr1:66986200-66989400	Weak transcription	HepG2	liver
3	chr1:66987000-66988000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:66987000-66988200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr1:66987000-66988200	Enhancers	NHLF	lung
6	chr1:66987000-66988400	Enhancers	Osteobl	bone
7	chr1:66987000-66990400	Enhancers	Hela-S3	cervix
8	chr1:66987200-66987600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:66987200-66987800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:66987200-66987800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:66987200-66988000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:66987200-66988200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:66987200-66988200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:66987200-66988200	Enhancers	HMEC	breast
15	chr1:66987200-66988200	Enhancers	NHDF-Ad	bronchial
16	chr1:66987200-66988200	Enhancers	NHEK	skin
17	chr1:66987200-66990200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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