Variant report

Variant	rs17472890
Chromosome Location	chr1:66991492-66991493
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10128053	0.86[TSI][hapmap]
rs10789207	0.89[ASN][1000 genomes]
rs12074963	0.89[MEX][hapmap];0.85[TSI][hapmap]
rs12083791	0.89[ASN][1000 genomes]
rs12093875	0.89[ASN][1000 genomes]
rs1338197	0.89[ASN][1000 genomes]
rs1530491	0.86[TSI][hapmap]
rs17129012	0.89[ASN][1000 genomes]
rs17129101	0.89[MEX][hapmap];0.82[TSI][hapmap]
rs17129226	0.82[CEU][hapmap]
rs17129244	0.83[CEU][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap]
rs17129245	0.82[CEU][hapmap]
rs17129252	0.82[CEU][hapmap]
rs17129269	0.83[CEU][hapmap]
rs17129307	0.83[CEU][hapmap]
rs17440390	0.83[CEU][hapmap]
rs1832417	0.89[MEX][hapmap];0.86[TSI][hapmap]
rs1988415	0.89[MEX][hapmap];0.86[TSI][hapmap]
rs20354	0.82[CEU][hapmap]
rs2166307	0.86[TSI][hapmap]
rs2182110	0.83[CEU][hapmap]
rs2312151	0.81[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs3901541	0.83[CEU][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap]
rs41405244	0.86[TSI][hapmap]
rs41418445	0.86[TSI][hapmap]
rs41511845	0.86[TSI][hapmap]
rs6588210	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs6588211	0.82[CEU][hapmap]
rs6588212	0.83[CEU][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap]
rs6588213	0.83[CEU][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap]
rs6664698	0.88[MEX][hapmap];0.86[TSI][hapmap]
rs6690186	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72677052	0.89[ASN][1000 genomes]
rs7536634	0.82[CEU][hapmap]
rs7538967	0.83[CEU][hapmap]
rs7540244	0.82[CEU][hapmap]
rs7543378	0.83[CEU][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap]
rs7545674	0.83[CEU][hapmap]
rs920986	0.82[CEU][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17472890	DLEU2L	cis	parietal	SCAN
rs17472890	TCTEX1D1	cis	cerebellum	SCAN
rs17472890	TCTEX1D1	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66987800-66992600	Weak transcription	HUVEC	blood vessel
2	chr1:66988000-66993400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:66988200-66993000	Weak transcription	NHDF-Ad	bronchial
4	chr1:66988400-66991600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:66988400-66998200	Weak transcription	Osteobl	bone
6	chr1:66989800-66991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:66990000-66991600	Weak transcription	Fetal Heart	heart
8	chr1:66990600-66992000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:66990800-66994800	Enhancers	NHLF	lung
10	chr1:66991000-66992000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:66991200-66992000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:66991400-66991800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:66991400-66992000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links