Variant report

Variant	rs2069250
Chromosome Location	chr3:142679077-142679078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000241570	TF binding region
U2SURP	TF binding region
ENSG00000241592	TF binding region
ENSG00000163714	Chromatin interaction
ENSG00000268129	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13326802	0.90[AMR][1000 genomes]
rs1392177	0.97[AMR][1000 genomes]
rs2276758	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3732743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58904989	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9844683	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv877563	chr3:142661350-142743889	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142667200-142681000	Weak transcription	Right Ventricle	heart
2	chr3:142669200-142680800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:142674200-142680200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:142675200-142680000	Enhancers	HepG2	liver
5	chr3:142676200-142681600	Weak transcription	Psoas Muscle	Psoas
6	chr3:142676800-142679400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr3:142677200-142679400	Enhancers	Liver	Liver
8	chr3:142677800-142679600	Enhancers	A549	lung
9	chr3:142678000-142679200	Weak transcription	K562	blood
10	chr3:142678000-142681000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:142678400-142679200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:142678400-142679600	Bivalent Enhancer	Fetal Lung	lung
13	chr3:142678400-142681000	Weak transcription	Pancreas	Pancrea
14	chr3:142678800-142679400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:142679000-142681400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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