Variant report

Variant	rs2276758
Chromosome Location	chr3:142681090-142681091
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13326802	0.90[AMR][1000 genomes]
rs1392177	0.97[AMR][1000 genomes]
rs2069250	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3732743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58904989	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9844683	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv877563	chr3:142661350-142743889	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142676200-142681600	Weak transcription	Psoas Muscle	Psoas
2	chr3:142679000-142681400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:142679400-142681400	Weak transcription	Right Atrium	heart
4	chr3:142679400-142682000	Flanking Active TSS	Liver	Liver
5	chr3:142679800-142681800	Weak transcription	K562	blood
6	chr3:142680600-142681200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:142680600-142682000	Flanking Active TSS	HepG2	liver
8	chr3:142681000-142681200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:142681000-142681200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:142681000-142681200	Enhancers	Right Ventricle	heart
11	chr3:142681000-142681200	Active TSS	A549	lung
12	chr3:142681000-142681400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:142681000-142681400	Bivalent Enhancer	Left Ventricle	heart
14	chr3:142681000-142681600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr3:142681000-142682000	ZNF genes & repeats	Pancreas	Pancrea
16	chr3:142681000-142683600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links