Variant report

Variant	rs207436
Chromosome Location	chr2:31559689-31559690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs207430	0.90[EUR][1000 genomes]
rs207433	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs207439	0.93[EUR][1000 genomes]
rs207441	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs207442	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs207444	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs207448	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs207449	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs207450	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs207451	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs207452	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949028	chr2:31502801-31665108	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv2762446	chr2:31521093-31610311	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31548000-31634600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:31553600-31560200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:31556200-31559800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:31556200-31561000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:31556400-31561600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:31556600-31559800	Enhancers	HSMMtube	muscle
7	chr2:31556600-31561600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:31556800-31560400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:31556800-31561400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:31556800-31561600	Enhancers	HSMM	muscle
11	chr2:31557200-31579600	Strong transcription	Liver	Liver
12	chr2:31557600-31560400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:31557600-31563600	Weak transcription	Gastric	stomach
14	chr2:31558200-31573200	Strong transcription	Fetal Intestine Large	intestine
15	chr2:31558400-31560400	Enhancers	Osteobl	bone
16	chr2:31558400-31560600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:31558400-31561400	Enhancers	NH-A	brain
18	chr2:31558400-31561400	Enhancers	NHDF-Ad	bronchial
19	chr2:31558600-31560200	Genic enhancers	NHEK	skin
20	chr2:31558600-31561400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr2:31558800-31560000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr2:31558800-31560400	Transcr. at gene 5' and 3'	HMEC	breast
23	chr2:31558800-31560600	Weak transcription	Esophagus	oesophagus
24	chr2:31558800-31560800	Weak transcription	A549	lung
25	chr2:31558800-31561600	Enhancers	NHLF	lung
26	chr2:31558800-31564600	Strong transcription	Fetal Intestine Small	intestine
27	chr2:31559200-31559800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr2:31559400-31560600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr2:31559400-31561600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr2:31559600-31559800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:31559600-31560400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr2:31559600-31560600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr2:31559600-31560800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:31559600-31565600	Strong transcription	Duodenum Mucosa	Duodenum

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