Variant report

Variant	rs207444
Chromosome Location	chr2:31563797-31563798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17323225	1.00[LWK][hapmap]
rs207430	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs207433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs207436	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs207439	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs207441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs207442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs207448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs207449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs207450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs207451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs207452	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949028	chr2:31502801-31665108	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv2762446	chr2:31521093-31610311	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31548000-31634600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:31557200-31579600	Strong transcription	Liver	Liver
3	chr2:31558200-31573200	Strong transcription	Fetal Intestine Large	intestine
4	chr2:31558800-31564600	Strong transcription	Fetal Intestine Small	intestine
5	chr2:31559600-31565600	Strong transcription	Duodenum Mucosa	Duodenum
6	chr2:31560400-31576800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr2:31560800-31570800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:31560800-31599800	Weak transcription	Esophagus	oesophagus
9	chr2:31561200-31569800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:31561400-31564200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:31561600-31570400	Weak transcription	NHLF	lung
12	chr2:31562000-31564000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:31562200-31564000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:31562400-31563800	Strong transcription	NHEK	skin
15	chr2:31562400-31564000	Strong transcription	HMEC	breast
16	chr2:31562600-31563800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr2:31562800-31563800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:31562800-31563800	Weak transcription	Placenta	Placenta
19	chr2:31563600-31564400	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links