Variant report

Variant	rs2076056
Chromosome Location	chr6:15487782-15487783
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15243868..15248249-chr6:15486712..15491085,4	K562	blood:
2	chr6:15474412..15476958-chr6:15485865..15488051,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10949304	0.91[ASN][1000 genomes]
rs11964846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11966626	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13192234	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13192892	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13194650	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13196869	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13198780	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13202100	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs13202955	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs13204842	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13208563	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13209668	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17455404	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1967664	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2237138	0.89[EUR][1000 genomes]
rs2299043	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs35868206	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3819396	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4712251	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4715975	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4715979	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4715980	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6899342	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6899343	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6917591	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs742099	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs742100	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7756331	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7761778	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7769291	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7774429	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383056	0.89[EUR][1000 genomes]
rs9383062	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15461600-15491000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:15471000-15488200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:15471000-15502000	Weak transcription	A549	lung
4	chr6:15471400-15488200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:15480400-15487800	Weak transcription	NHLF	lung
6	chr6:15480400-15488200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:15480400-15490600	Weak transcription	NHDF-Ad	bronchial
8	chr6:15480600-15488400	Weak transcription	NH-A	brain
9	chr6:15480800-15487800	Weak transcription	Osteobl	bone
10	chr6:15480800-15488200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:15481200-15491800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:15481400-15488400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:15482000-15488400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:15482200-15491400	Weak transcription	Fetal Brain Male	brain
15	chr6:15482400-15487800	Weak transcription	Fetal Lung	lung
16	chr6:15482400-15488400	Weak transcription	HSMM	muscle
17	chr6:15482400-15491400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:15483200-15490800	Weak transcription	HSMMtube	muscle
19	chr6:15483200-15491400	Weak transcription	Fetal Heart	heart
20	chr6:15484800-15488800	Weak transcription	Small Intestine	intestine
21	chr6:15484800-15488800	Weak transcription	Stomach Mucosa	stomach
22	chr6:15484800-15496400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:15485400-15487800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:15485800-15488200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:15486000-15489800	Strong transcription	Primary B cells from peripheral blood	blood
26	chr6:15486200-15488000	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:15486200-15488200	Weak transcription	Fetal Kidney	kidney
28	chr6:15486200-15489000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:15486200-15489000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:15486200-15489600	Strong transcription	Primary T cells from cord blood	blood
31	chr6:15486200-15491000	Strong transcription	Primary B cells from cord blood	blood
32	chr6:15486200-15491400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:15486400-15487800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:15486400-15488200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:15486400-15489000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:15486400-15489400	Strong transcription	Fetal Thymus	thymus
37	chr6:15486400-15490200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:15486400-15491600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:15486600-15487800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:15486600-15488800	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr6:15486600-15489800	Strong transcription	GM12878-XiMat	blood
42	chr6:15486600-15490000	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr6:15486600-15490000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:15486600-15490200	Strong transcription	Dnd41	blood
45	chr6:15486600-15491400	Weak transcription	Right Atrium	heart
46	chr6:15486800-15488000	Weak transcription	Brain Angular Gyrus	brain
47	chr6:15486800-15488200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:15486800-15489400	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr6:15486800-15489400	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr6:15486800-15490000	Strong transcription	K562	blood

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