Variant report

Variant	rs7756331
Chromosome Location	chr6:15493207-15493208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15493055..15494840-chr6:15568321..15570199,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10949304	0.93[ASN][1000 genomes]
rs11964846	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11966626	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13192234	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13192892	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13194650	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13196869	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13198780	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13202100	0.88[EUR][1000 genomes]
rs13202955	0.88[EUR][1000 genomes]
rs13204842	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13208563	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13209668	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17455404	0.88[EUR][1000 genomes]
rs1967664	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2076056	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237138	0.88[EUR][1000 genomes]
rs2299043	0.85[EUR][1000 genomes]
rs35868206	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3819396	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712251	0.90[EUR][1000 genomes]
rs4715975	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4715979	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4715980	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6899342	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6899343	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6917591	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs742099	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs742100	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7761778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7769291	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7774429	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383056	0.87[EUR][1000 genomes]
rs9383062	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15471000-15502000	Weak transcription	A549	lung
2	chr6:15484800-15496400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:15486800-15502000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:15487200-15508000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:15489200-15495800	Weak transcription	HMEC	breast
6	chr6:15489200-15496200	Weak transcription	Small Intestine	intestine
7	chr6:15489200-15496800	Weak transcription	Colonic Mucosa	Colon
8	chr6:15489200-15504400	Weak transcription	Fetal Brain Female	brain
9	chr6:15489600-15493400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:15489600-15495400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:15489800-15495200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:15489800-15495600	Weak transcription	Aorta	Aorta
13	chr6:15490000-15494600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:15490000-15495800	Weak transcription	Liver	Liver
15	chr6:15490000-15496200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:15490000-15496400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:15490200-15493400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:15490200-15495200	Weak transcription	Lung	lung
19	chr6:15490200-15495600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:15490200-15495600	Weak transcription	Esophagus	oesophagus
21	chr6:15490200-15496400	Weak transcription	Gastric	stomach
22	chr6:15490200-15496400	Weak transcription	Pancreas	Pancrea
23	chr6:15490800-15496800	Enhancers	HSMMtube	muscle
24	chr6:15491000-15495400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr6:15491200-15495000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:15491400-15493400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:15491400-15494600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:15491400-15496200	Enhancers	Ovary	ovary
29	chr6:15491600-15495000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:15491800-15494000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:15491800-15494200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:15491800-15495200	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:15491800-15501400	Weak transcription	NH-A	brain
34	chr6:15492000-15493600	Strong transcription	K562	blood
35	chr6:15492000-15493800	Strong transcription	NHEK	skin
36	chr6:15492000-15494000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:15492000-15495000	Weak transcription	Placenta	Placenta
38	chr6:15492000-15496800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:15492000-15498400	Weak transcription	Stomach Mucosa	stomach
40	chr6:15492000-15501800	Weak transcription	Fetal Brain Male	brain
41	chr6:15492200-15493600	Strong transcription	Fetal Intestine Large	intestine
42	chr6:15492200-15493800	Strong transcription	GM12878-XiMat	blood
43	chr6:15492200-15494000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:15492200-15494000	Weak transcription	Brain Germinal Matrix	brain
45	chr6:15492200-15494000	Weak transcription	Colon Smooth Muscle	Colon
46	chr6:15492200-15495200	Weak transcription	Fetal Heart	heart
47	chr6:15492200-15495400	Weak transcription	Fetal Lung	lung
48	chr6:15492200-15495600	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr6:15492200-15495600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:15492200-15495800	Weak transcription	Rectal Mucosa Donor 29	rectum

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