Variant report

Variant	rs2076913
Chromosome Location	chr3:67649769-67649770
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10510965	0.82[EUR][1000 genomes]
rs11127657	0.80[EUR][1000 genomes]
rs11924268	0.92[EUR][1000 genomes]
rs17046689	0.92[EUR][1000 genomes]
rs2363091	0.80[EUR][1000 genomes]
rs2885692	0.92[EUR][1000 genomes]
rs4371532	1.00[CEU][hapmap]
rs55662797	0.85[EUR][1000 genomes]
rs55706427	0.85[EUR][1000 genomes]
rs55780245	0.85[EUR][1000 genomes]
rs55811928	0.85[EUR][1000 genomes]
rs55871518	0.85[EUR][1000 genomes]
rs55933747	0.85[EUR][1000 genomes]
rs56149443	0.85[EUR][1000 genomes]
rs56162614	0.85[EUR][1000 genomes]
rs56291937	0.85[EUR][1000 genomes]
rs56317125	0.85[EUR][1000 genomes]
rs56341400	0.85[EUR][1000 genomes]
rs56411806	0.85[EUR][1000 genomes]
rs57450793	0.92[EUR][1000 genomes]
rs59742261	0.80[EUR][1000 genomes]
rs60283689	0.92[EUR][1000 genomes]
rs6765734	0.88[EUR][1000 genomes]
rs6767025	0.89[EUR][1000 genomes]
rs6772446	0.80[EUR][1000 genomes]
rs6798438	0.88[EUR][1000 genomes]
rs6806897	0.85[EUR][1000 genomes]
rs6810139	0.88[EUR][1000 genomes]
rs72929333	0.92[EUR][1000 genomes]
rs9683084	0.89[EUR][1000 genomes]
rs9809720	0.89[EUR][1000 genomes]
rs9824641	0.96[EUR][1000 genomes]
rs9830311	0.89[EUR][1000 genomes]
rs9871141	0.96[EUR][1000 genomes]
rs9882828	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv460700	chr3:67393629-67712970	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv590560	chr3:67393629-67712970	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv590561	chr3:67548852-67690626	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv876922	chr3:67635506-67755257	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67579400-67657600	Weak transcription	Pancreas	Pancrea
2	chr3:67601800-67673000	Weak transcription	Fetal Heart	heart
3	chr3:67602200-67654800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:67602200-67655400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:67602200-67656000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:67612400-67697200	Weak transcription	Hela-S3	cervix
7	chr3:67614000-67658600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:67618600-67655600	Weak transcription	NH-A	brain
9	chr3:67621200-67657600	Weak transcription	Fetal Stomach	stomach
10	chr3:67621400-67650400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr3:67621800-67658000	Weak transcription	Thymus	Thymus
12	chr3:67622200-67657400	Weak transcription	Brain Substantia Nigra	brain
13	chr3:67623400-67650000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr3:67624800-67651000	Weak transcription	Adipose Nuclei	Adipose
15	chr3:67624800-67658200	Weak transcription	Fetal Intestine Small	intestine
16	chr3:67627200-67655400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:67628400-67655000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:67629200-67654800	Weak transcription	Fetal Kidney	kidney
19	chr3:67629200-67675000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:67629400-67658000	Weak transcription	Right Ventricle	heart
21	chr3:67629600-67655600	Weak transcription	HUVEC	blood vessel
22	chr3:67631400-67700200	Weak transcription	K562	blood
23	chr3:67631800-67664600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr3:67638000-67650400	Weak transcription	Fetal Lung	lung
25	chr3:67638000-67650800	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:67638000-67651200	Weak transcription	Ovary	ovary
27	chr3:67638000-67657200	Weak transcription	Fetal Muscle Leg	muscle
28	chr3:67638000-67657600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:67638600-67655400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr3:67638600-67655600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr3:67638800-67653200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr3:67639000-67662000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr3:67639200-67658600	Weak transcription	Colonic Mucosa	Colon
34	chr3:67640200-67656000	Weak transcription	Left Ventricle	heart
35	chr3:67640200-67656200	Weak transcription	Lung	lung
36	chr3:67640200-67678000	Weak transcription	Small Intestine	intestine
37	chr3:67640400-67658600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:67640800-67657200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr3:67641800-67655400	Weak transcription	Placenta	Placenta
40	chr3:67642600-67651000	Strong transcription	Primary B cells from cord blood	blood
41	chr3:67642800-67658400	Weak transcription	HSMMtube	muscle
42	chr3:67643000-67656000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr3:67644600-67655000	Weak transcription	Gastric	stomach
44	chr3:67644600-67657400	Weak transcription	Spleen	Spleen
45	chr3:67644600-67658600	Weak transcription	Esophagus	oesophagus
46	chr3:67645000-67651000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr3:67645000-67653800	Weak transcription	HMEC	breast
48	chr3:67645000-67654800	Weak transcription	Osteobl	bone
49	chr3:67645000-67656000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:67645400-67657600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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