Variant report

Variant	rs9871141
Chromosome Location	chr3:67661770-67661771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:67661740..67663579-chr3:67665104..67667136,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11127657	0.84[EUR][1000 genomes]
rs11924268	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17046689	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2076913	0.96[EUR][1000 genomes]
rs2363091	0.84[EUR][1000 genomes]
rs2885692	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4371532	1.00[CEU][hapmap]
rs55662797	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55706427	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55780245	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55811928	0.88[EUR][1000 genomes]
rs55871518	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55933747	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56149443	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56162614	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56291937	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56317125	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56341400	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56411806	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57450793	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58637570	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59742261	0.84[EUR][1000 genomes]
rs60283689	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6765734	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6767025	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6772446	0.84[EUR][1000 genomes]
rs6798438	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6806897	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6810139	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72929333	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9683084	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9809720	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9824641	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9830311	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9882327	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9882828	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv460700	chr3:67393629-67712970	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv590560	chr3:67393629-67712970	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv590561	chr3:67548852-67690626	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv876922	chr3:67635506-67755257	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv428739	chr3:67656829-67730379	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67601800-67673000	Weak transcription	Fetal Heart	heart
2	chr3:67612400-67697200	Weak transcription	Hela-S3	cervix
3	chr3:67629200-67675000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:67631400-67700200	Weak transcription	K562	blood
5	chr3:67631800-67664600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:67639000-67662000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:67640200-67678000	Weak transcription	Small Intestine	intestine
8	chr3:67646200-67667400	Weak transcription	Psoas Muscle	Psoas
9	chr3:67651200-67664800	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:67653400-67662200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:67653400-67669800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:67653600-67664600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:67653800-67671200	Weak transcription	Stomach Mucosa	stomach
14	chr3:67653800-67679600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:67654600-67661800	Strong transcription	Primary B cells from cord blood	blood
16	chr3:67655000-67662000	Strong transcription	Dnd41	blood
17	chr3:67655800-67665000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:67658800-67672400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:67659000-67662800	Weak transcription	Brain Anterior Caudate	brain
20	chr3:67659000-67663400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr3:67659600-67664800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:67659600-67674200	Weak transcription	Right Ventricle	heart
23	chr3:67659600-67680800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr3:67659800-67662400	Weak transcription	Brain Substantia Nigra	brain
25	chr3:67659800-67662800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr3:67659800-67664600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:67659800-67667400	Weak transcription	Placenta	Placenta
28	chr3:67659800-67670400	Weak transcription	Fetal Intestine Small	intestine
29	chr3:67659800-67680000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr3:67659800-67681000	Weak transcription	Spleen	Spleen
31	chr3:67659800-67684400	Weak transcription	Esophagus	oesophagus
32	chr3:67659800-67685600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr3:67659800-67690600	Weak transcription	Brain Hippocampus Middle	brain
34	chr3:67659800-67697400	Weak transcription	Colonic Mucosa	Colon
35	chr3:67660000-67664600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr3:67660000-67664600	Weak transcription	Left Ventricle	heart
37	chr3:67660000-67664600	Weak transcription	Thymus	Thymus
38	chr3:67660000-67664800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr3:67660000-67665000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr3:67660000-67667000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr3:67660000-67667200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr3:67660000-67667400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:67660000-67668600	Weak transcription	Fetal Stomach	stomach
44	chr3:67660000-67669200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr3:67660000-67669600	Weak transcription	Aorta	Aorta
46	chr3:67660000-67669800	Weak transcription	Adipose Nuclei	Adipose
47	chr3:67660000-67670000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr3:67660000-67670400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr3:67660000-67673200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr3:67660000-67680200	Weak transcription	H9 Cell Line	embryonic stem cell

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