Variant report

Variant	rs2077953
Chromosome Location	chr6:107158033-107158034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1884266	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2642463	0.88[EUR][1000 genomes]
rs2748292	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2748293	0.88[EUR][1000 genomes]
rs2748294	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2798361	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2798362	0.87[EUR][1000 genomes]
rs2798363	0.88[EUR][1000 genomes]
rs3117393	0.88[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2077953	PREP	cis	parietal	SCAN
rs2077953	ARMC2	cis	cerebellum	SCAN
rs2077953	SCML4	cis	parietal	SCAN
rs2077953	AIM1	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107151000-107162200	Weak transcription	Fetal Kidney	kidney
2	chr6:107152400-107161400	Weak transcription	Pancreas	Pancrea
3	chr6:107154200-107160400	Weak transcription	Primary B cells from cord blood	blood
4	chr6:107154400-107158200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:107157600-107158200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:107157800-107158600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr6:107157800-107158800	Enhancers	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links