Variant report

Variant	rs208010
Chromosome Location	chr17:46224574-46224575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46210896..46212832-chr17:46222809..46224795,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2044985	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469808	chr17:46049868-46228673	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv482897	chr17:46049868-46228673	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv908576	chr17:46147807-46260366	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46200400-46236600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr17:46204200-46225200	Weak transcription	Liver	Liver
3	chr17:46211200-46231600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr17:46212400-46234800	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr17:46215400-46225400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:46216400-46251400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr17:46216600-46235600	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr17:46218200-46224800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr17:46220600-46225600	Strong transcription	Primary T cells from cord blood	blood
10	chr17:46220800-46227200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:46220800-46228400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr17:46220800-46249000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:46221200-46228000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr17:46221400-46230800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr17:46221600-46225400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr17:46221600-46225400	Weak transcription	Thymus	Thymus
17	chr17:46221600-46225600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr17:46221600-46226800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr17:46221600-46238400	Weak transcription	Fetal Thymus	thymus
20	chr17:46222800-46234600	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr17:46223200-46225200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr17:46223200-46226600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr17:46223200-46228400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr17:46223400-46226400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr17:46223400-46226600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr17:46224200-46225400	Strong transcription	GM12878-XiMat	blood
27	chr17:46224200-46226200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
28	chr17:46224400-46227200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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