Variant report

Variant	rs2044985
Chromosome Location	chr17:46322027-46322028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46321872..46325036-chr17:46699113..46702600,4	K562	blood:
2	chr17:46320871..46323469-chr17:46343037..46345002,2	K562	blood:
3	chr17:46320855..46323440-chr17:46697694..46700613,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs208010	1.00[CEU][hapmap]
rs208016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2229368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28699313	1.00[ASN][1000 genomes]
rs35132860	1.00[ASN][1000 genomes]
rs35738964	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4274478	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6504092	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077814	1.00[CHB][hapmap]
rs9908329	1.00[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46306600-46335400	Weak transcription	Thymus	Thymus
2	chr17:46315800-46323000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr17:46316400-46322800	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr17:46316400-46324600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr17:46317200-46322600	Enhancers	Fetal Intestine Small	intestine
6	chr17:46317200-46324000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr17:46317400-46322400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr17:46317400-46322800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr17:46317400-46322800	Enhancers	Fetal Intestine Large	intestine
10	chr17:46317800-46323000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr17:46318800-46322400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr17:46318800-46322600	Enhancers	NHDF-Ad	bronchial
13	chr17:46319000-46322600	Enhancers	GM12878-XiMat	blood
14	chr17:46319000-46324800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr17:46319600-46322800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr17:46319800-46322400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr17:46319800-46323200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr17:46319800-46323600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr17:46319800-46324000	Weak transcription	Placenta	Placenta
21	chr17:46320400-46322600	Enhancers	Primary hematopoietic stem cells	blood
22	chr17:46320400-46322600	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr17:46320800-46322200	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr17:46320800-46322600	Enhancers	HSMM	muscle
25	chr17:46321000-46322600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr17:46321000-46324800	Enhancers	NHEK	skin
27	chr17:46321200-46322400	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr17:46321200-46322400	Enhancers	Adipose Nuclei	Adipose
29	chr17:46321200-46322400	Enhancers	NHLF	lung
30	chr17:46321200-46322800	Enhancers	Osteobl	bone
31	chr17:46321400-46322200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr17:46321400-46322400	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr17:46321400-46322400	Enhancers	Muscle Satellite Cultured Cells	--
34	chr17:46321400-46322400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr17:46321400-46322400	Enhancers	Fetal Kidney	kidney
36	chr17:46321400-46322600	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr17:46321400-46322600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr17:46321400-46322600	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr17:46321400-46322600	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr17:46321400-46322600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr17:46321400-46322600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr17:46321400-46322600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr17:46321400-46322600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr17:46321400-46322600	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr17:46321400-46322600	Enhancers	Small Intestine	intestine
46	chr17:46321400-46322600	Flanking Active TSS	A549	lung
47	chr17:46321400-46322600	Enhancers	HMEC	breast
48	chr17:46321400-46322800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr17:46321400-46322800	Flanking Active TSS	K562	blood
50	chr17:46321400-46324200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links